Category: Science

Genetic Diversity Meets The Darly Arabian

In stark rebuttal to the growing “genetic diversity” cult in animal breeding (a thinly-veiled and politically motivated animal rights attack on purebreds) a study into Thoroughbred pedigrees contradicts an accusation levelled at purebred dog breeders, especially show breeders – that “pedigree worship” and the overuse of popular sires and subsequent inbreeding to consciously concentrate the genes of specific dogs is responsible for a phenomenon called “bottlenecking” and a loss of genetic diversity.
What is bottlenecking? When one does extended pedigree research to discover all the animals in a population trace a great preponderance of their ancestry to a handful of ancestors, making them all highly inbred and closely related, no matter what the first 4 generations of a pedigree indicate for ancestors. For example, 10 generation pedigrees in my breed often produce COI – “coefficient of inbreeding” calculations exceeding 50% – mathematically indicating that the dog is more inbred than if it were produced by a father to daughter mating.
(A dog pedigree with COI shown – the “bottleneck” sire Ch.Sky Rocket’s Upswing will repeat dozens of times if you follow all of the lines back through the generations.)
The theory is that genetic bottlenecks are created of arbitrary decisions of breeders to inbreed for short term gain or simple “beauty traits” (making show breeders the convenient villains) and that the phenomenon can be prevented by intentionally low COI matings and selection for performance traits – argued to be highly complex and thus, destroyed by intense homozygosity (inbreeding).
The political aspect enters when the diversity cultists argue that breed organizations and governments prohibit breeders from using inbreeding as a methodology – this is already occuring in some European countries as the animal rights movement conquers old battlefields and goes looking for new ones.
Well, meet the Thoroughbred.

2003 Kentucky Derby winner Funny Cide
Seldom closely inbred, the history of the high performance Thoroughbred is well known and documented. Stud books have been maintained for centuries. The breed was founded on three sires of the 17th century, the Darley Arabian, the Byerly Turk and the Godolphin Barb. Dna evidence has now confirmed what was already suspected by pedigree researchers;

According to a study published in The Irish Times on Dec. 13, 2001, “the Darley Arabian can lay claim to 95 percent of the paternal lineages.”
The Darley Arabian

The study, using DNA analysis, traced the lineage of a million British horses dating back two centuries, in the largest analysis of pedigrees made.
“The most striking thing is that we were able to confirm the dominance of the three most important founder stallions, but what is new is that one of them is responsible for 95 percent of all the male lineage,” said Patrick Cunningham, professor of animal genetics at Trinity College, where the study was conducted.

The role of performance selection has not prevented the bottleneck effect – indeed, it may have created it. When animals are chosen for breeding on the basis of highly specific traits, be they aesthetic or performance related, the sons of one sire will tend to outperform those of others and will gradually push out their lines.
Horse breeders did not know they were concentrating their lines to one sire to this extent, nor were they doing so intentionally. The theory of performance driven breeding should have resulted in a fairly even distribution of the three founding sires – instead, two lines are nearly extinct.
The phenomenon has been repeated in every species traced, including relatively “inbred” humans where it is thought that our gene pool passed through a prehistoric bottleneck of about 1000 ancestors and where Ghengis Khan has an estimated 16 million descendants.
Not that this suggests you should go cruising for chicks at the family reunion.

Hope For Cystic Fibrosis

American and Canadian researchers reported Thursday that they were able to resolve the symptoms of the debilitating disease in mice by dosing them with curcumin, a compound that gives turmeric its brilliant yellow colour.
Furthermore, CF mice receiving treatment with curcumin had a life-span almost identical to that of a normal healthy mouse – a startling development in a disease that generally kills human sufferers by their mid-30s.
While it’s too soon to say whether curcumin will have the same impact in humans, the U.S. Cystic Fibrosis Foundation is already developing human safety and dosage trials which could begin this summer.

When a treatment is as simple as that found in a common spice, one would hope that such trials would be fast tracked – especially as there is likely to be immediate experimentation in the form of home remedies.

Mice with CF who were fed infant formula laced with curcumin stopped suffering the symptoms of the disease. But Caplan and his co-investigators wanted to be sure that the effect they were seeing was caused by the compound, so they enlisted the help of cell biologist Dr. Gergely Lukacs – one of Canada’s leading CF researchers – at Toronto’s Hospital for Sick Children.
“I was very skeptical at the beginning,” Lukacs said in an interview Thursday.
But he tested the compound in cell cultures and the findings were clear. The protein that was trapped in the interior of the cell moved to its proper location when curcumin was added. “I am 100 per cent convinced,” said the former skeptic. “The animal studies from the very beginning are absolutely convincing.”

No information as to how they were led to do research into this spice, but it seems that sufferers were already aware it had beneficial properties, while it has had long use as a herbal remedy for other ailments, including Alzheimer’s.

da Vinci Project

“So, where you guys from?”

A launch date for a Canadian entry in the race to build the world’s first privately funded manned space capsule will be announced later this month.

“Just outside Toronto.”
“No shit? Hey, Brian, these guys say they’re from Toronto. Is it my shot yet?”
“No, shithead, I’m just standing here holding down the floor.”

The Toronto-based entry known as the da Vinci Project plans to launch its Wildfire capsule into the stratosphere from the airport in Kindersley, a community of 5,500 southwest of Saskatoon, this summer.

“So what brings you to the Kindersley bar? Rigs?
“No. We’re …ah… into atmospheric research.”
“Like weather balloons?”
“Sort of… hey, can we buy you guys a round?

The capsule is to be carried by the world’s largest helium balloon to a height of 24 km, where its rockets will fire, shooting the capsule up to about 120 km above Earth.

“Sure!”
“Up for a game of pool, boys?”
“Hey, bring us some shooters, eh?”

The project is one of 24 vying for a $10-million prize being offered by the X Prize Foundation to the first group to launch a manned reusable capsule 100 km into space twice within two weeks.

“So, da Vinci, what’s in the bag?”
“A helmet. Hey – we need another round here .. Here, try it on…”

Rocks At The Windshield

The latest in a series of “Whew! That was close!” asteroid sightings.

The object, designated 2004 FH, is roughly 30 meters (100 feet) in diameter and will pass just 43,000 km (26,500 miles, or about 3.4 Earth diameters) above the Earth’s surface on March 18th at 5:08 PM EST (2:08 PM PST, 22:08 UTC).

Apparently, the earth travels in the wake of some giant galactic sanding truck.
Even a little asteroid would cause a lot of planetary inconvenience – something you wouldn’t wish on your worst en..e…m … well…. there is a spot on the Pakistan-Afghanistan border, and another just north of Baghdad, and …
Well, no. That would be unkind.
Besides, the Eiffel Tower is kinda cool.

The Ultimate Jigsaw Puzzle

Build your own chicken using four simple ingredients.

Chicken genome assembled
BETHESDA, Md., Mon., March 1, 2004 – The National Human Genome Research Institute (NHGRI), one of the National Institutes of Health (NIH), today announced that the first draft of the chicken genome sequence has been deposited into free public databases for use by biomedical and agricultural researchers around the globe.

Coming Soon: Steven Den Beste– How to build a Cocker Spaniel for the kids, altering only 27 base pairs!

Mary Shelley Vs God

There’s a fair bit of indignation in the media and ’round the blogosphere this week about Bush’s replacement of two members of a bioethics council formed to advise him on thorny issues of reproduction and scientific research. Glenn Reynolds weighs in with a Tech Central Station column:

Why, indeed? A ban on this sort of research might condemn millions to unnecessary early death. It’s certainly the sort of thing that ought to be debated in an election year. And that is sure to be. Does Bush want to be portrayed as the minion of religious extremists who’d stifle science even at the cost of lifesaving medical technologies? If he doesn’t, then he’s going about things all wrong.

Only in the western world is succumbing in late middle age to a disease like Parkinsons considered an “early death”. Those lifesaving technologies being developed to treat disease of middle age are extraordinarily expensive. Our health systems are under huge funding pressures for a very simple reason – treatment technologies cost more to develop and deliver than the average health care consumer is actually worth as a taxpayer.
Research that crosses into the realm of human reproductiion and genetics requires careful monitoring and public debate. Bush is being accused of stacking the deck to place people on the panel who are more likely to give him advice he wants to hear. That’s a fair enough criticism, and one I agree with, if true.
But I have noticed something odd about this particular poli-scientific debate. The media spin on this is, as usual, from the secular, liberal “default” position – “Bush is allowing his personal religious beliefs to obstruct important research, undermining American leadership in scientific advancement.”
For the past decade, stunning advances in the field of genetic engineering of food crops have been realized – golden rice, engineered to produce pro-Vitamin A; Roundup Ready canola has allowed farmers to dramatically reduce the number of herbicides required. GMO wheat awaits approval. This excellent article in Atlantic Monthly summarizes the progress and the promise.
Yet, this promise is seriously threatened by fearmongering. Europe and Japan are invoking policies on GMO crops that suggest they are the minions of the environmental churches of Greenpeace and the Sierra Club.
Advances in agscience that can truly save millions from an early death and malnutrition, aid the preservation of environment and do so for pennies a person are being thwarted by European governments, mindful of Green party, environmental and consumer group influence. Proposed GMO labelling requirements and threats to close borders to transgenic crops effectively keeps many from becoming commercial.
Many of the same types who would criticize Bush for including religious opinion on a scientific panel debating the use of fetal cells – are those who refer to transgenic crops as “Frankenfood” .
Biblical scholars have no place in scientific discourse, but Mary Shelley does?
Update: David Bernstein explains my ambivilence about the appointments, and a lot better than I could

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